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from types import DynamicClassAttribute import numpy as np from matplotlib import pyplot as plt from Vaja_2.skripta import loadImage, displayImage #10.11 prikazovanje 3D slik def loadImage3D(iPath, iSize, iType): #kopirana in dodelana koda loadImage fid = open(iPath, 'rb') #r = read, rb = read binary, funkcija open nam vrne samo kazalec na file FILE ID buffer = fid.read() #naredimo buffer kjer preberemo kaj je v fid, niz znakov slike - uint8 #buffer_len = len(np.frombuffer(buffer, dtype=type)) #numpy funkcija ki razdeli "string" slike, recimo na 8 bit uint #preverjamo ali se dolžina seznama ujema z napovedano velikostjo matrike - size v def funkcije oImage_shape = (iSize[1], iSize[0], iSize[2]) #sekvenco znakov razseka na "vrstice" slike, order 'F' pomeni da sliko bere v stolpičnem načinu (namesto vrstic) oImage = np.ndarray(oImage_shape, dtype=iType, buffer=buffer, order='F') fid.close() return oImage def displayImage3D(iImage, iTitle='', iGridX=None, iGridY=None): #prazne navednice da je lahko brez naslova fig = plt.figure() plt.title(iTitle) if iGridX is None or iGridY is None: extend = (-0.5, iImage.shape[1]-0.5, iImage.shape[0]-0.5, -0.5) else: stepX = iGridX[1] - iGridX[0] stepY = iGridY[1] - iGridY[0] extend = ( iGridX[0] - stepX/2, iGridX[-1] + stepX/2, iGridY[-1] + stepY/2, iGridY[0] + stepY/2 ) plt.imshow( iImage, cmap="gray", # plt.cm.gray, kliče sivo iz možnih colormapov vmin=0, vmax=255, #definiramo razpon brav, da ne prilagodi sam (8bit uint) extent=extend, #od kje do kje prikažemo sliko, image.shape 1 so stolpci ) def getPlanarCrossSection(iImage, iDim, iNormVec, iLoc): Y, X, Z = iImage.shape dx, dy, dz = iDim #stranski prerez (glej predavanja)m np.array == np.array vrne array true/false, array == array pa samo true/false #ko je nx = (1,0,0), rezina iz X osi if iNormVec == [1, 0, 0]: oCS = iImage[:, iLoc, :].T #tu lahko dodamo .T za transponiranje (obračanje matrike) oH = np.arange(Y) * dy #vertikalna os * velikost voxlov oV = np.arange(Z) * dz #velikost z osi * korak vzorčenja, isto kot gori elif iNormVec == [0,1,0]: oCS = iImage[iLoc, :, :].T oH = np.arange(X) * dx oV = np.arange(Z) * dz elif iNormVec == [0,0,1]: oCS = iImage[:, :, iLoc] oH = np.arange(X) * dx oV = np.arange(Y) * dy return oCS, oH, oV def getPlanarProjection(iImage, iDim, iNormVec, iFunc): Y, X, Z = iImage.shape dx, dy, dz = iDim # stranska projekcija if iNormVec == [1, 0, 0]: #dolgi način #oP = np.zeros((Z, Y)) #for z in range(Z): # for y in range(Y): #oP[z,y] = iFunc(iImage[y, :, z]) #np.max funkcija ima sposobnost iskanja po vrsticah, np.max(a, axis = 0) bo npr iskala max vrednosti po stolpcih, np.max(a, axis = 1) pa po vrsticah oP = iFunc(iImage, axis = 1).T oH = np.arange(Y) * dy oV = np.arange(Z) * dz #celna projekcija, ny = 0,1,0 elif iNormVec == [0,1,0]: oP = iFunc(iImage, axis = 1).T oH = np.arange(X) * dx oV = np.arange(Z) * dz #prečna projekcija, nz = 0,0,1 elif iNormVec == [0,0,1]: oP = iFunc(iImage, axis = 2) oH = np.arange(X) * dx oV = np.arange(Y) * dy return oP, oH, oV if __name__ == "__main__": imSize = [512, 58, 907] pxDim = [0.597656, 3, 0.597656] #v mm, iz navodil I = loadImage3D('Vaja_4\spine-512x058x907-08bit.raw', imSize, np.uint8) print(I.shape) xc = 290 sagCS, sagH, sagV = getPlanarCrossSection(I, pxDim, [1,0,0], xc) title = f'Stranski pravokotni ravninski prerez pri xc = {xc}' displayImage3D(sagCS, title, sagH, sagV) #sag so vektorji koordinat xc = 500 axCS, axH, axV = getPlanarCrossSection(I, pxDim, [0,0,1], xc) title = f'Prečni pravokotni ravninski prerez pri xc = {xc}' displayImage3D(axCS, title, axH, axV) #sag so vektorji koordinat func = np.max sagP, sagPH, sagPV = getPlanarProjection(I, pxDim, [1,0,0], func) title = f'Stranska pravokotna ravninska projekcija za func = {func.__name__}' displayImage3D(sagP, title, sagPH, sagPV) sagP2, sagPH2, sagPV2 = getPlanarProjection(I, pxDim, [0,0,1], func) title = f'Stranska pravokotna ravninska projekcija za func = {func.__name__}' displayImage3D(sagP2, title, sagPH2, sagPV2)
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