Singularity> convertFromSource.py -i /eos/cms/store/group/phys_btag/PHM_tagger/test/Data_Zprime_bb_merged/samples.txt -o /eos/cms/store/group/phys_btag/PHM_tagger/test/elijah/etestConvert_TrainData_DF3 -c TrainData_DF 2022-05-31 01:16:11.430831: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0 2022-05-31 01:16:13,965:INFO:root: infile = /eos/cms/store/group/phys_btag/PHM_tagger/test/Data_Zprime_bb_merged/samples.txt 2022-05-31 01:16:13,965:INFO:root: outPath = /eos/cms/store/group/phys_btag/PHM_tagger/test/elijah/etestConvert_TrainData_DF3 2022-05-31 01:16:13,965:INFO:root: Start conversion /afs/cern.ch/user/e/esherida/.local/lib/python3.6/site-packages/numpy/lib/histograms.py:1123: RuntimeWarning: invalid value encountered in true_divide hist /= s 2022-05-31 01:16:22,260:INFO:DeepJetCore.DataCollection: creating dir /dev/shm/9195 2022-05-31 01:16:22,386:INFO:root: starting /eos/cms/store/group/phys_btag/PHM_tagger/test/Data_Zprime_bb_merged/ntuple_merged_0.root... 2022-05-31 01:16:22,396:INFO:DeepJetCore.DataCollection: async started 2022-05-31 01:16:22,397:INFO:DeepJetCore.DataCollection: start cp 2022-05-31 01:16:23,264:INFO:DeepJetCore.DataCollection: convertFromSourceFile reading /dev/shm/9195/9243_tmp_ntuple_merged_0.root problem in ntuple_merged_0.djctd Process Process-1: Traceback (most recent call last): File "/usr/lib/python3.6/multiprocessing/process.py", line 258, in _bootstrap self.run() File "/usr/lib/python3.6/multiprocessing/process.py", line 93, in run self._target(*self._args, **self._kwargs) File "/afs/cern.ch/user/e/esherida/DeepJetCore/DataCollection.py", line 446, in writeData_async td.writeFromSourceFile(tmpinput, self.weighterobjects, istraining = not self.istestdata, outname=newpath) File "/afs/cern.ch/user/e/esherida/DeepJetCore/TrainData.py", line 108, in writeFromSourceFile self.readFromSourceFile(filename, weighterobjects, istraining) File "/afs/cern.ch/user/e/esherida/DeepJetCore/TrainData.py", line 84, in readFromSourceFile x,y,w = self.convertFromSourceFile(filename, weighterobjects, istraining, **kwargs) File "/afs/cern.ch/user/e/esherida/DeepJetCore/DeepJet/modules/datastructures/TrainData_deepFlavour.py", line 1530, in convertFromSourceFile truth = reduceTruth(truth_arrays) File "/afs/cern.ch/user/e/esherida/DeepJetCore/DeepJet/modules/datastructures/TrainData_deepFlavour.py", line 1494, in reduceTruth return np.vstack((b,bb+gbb,lepb,c+cc+gcc,uds,g)).transpose() File "<__array_function__ internals>", line 6, in vstack TypeError: no implementation found for 'numpy.vstack' on types that implement __array_function__: [] 2022-05-31 01:18:15,425:INFO:root: finished /eos/cms/store/group/phys_btag/PHM_tagger/test/Data_Zprime_bb_merged/ntuple_merged_0.root... 2022-05-31 01:18:15,699:INFO:root: starting /eos/cms/store/group/phys_btag/PHM_tagger/test/Data_Zprime_bb_merged/ntuple_merged_1.root... 2022-05-31 01:18:15,706:INFO:root: >>>> collected result 1 of 21 2022-05-31 01:18:15,707:INFO:DeepJetCore.DataCollection: async started 2022-05-31 01:18:15,708:INFO:DeepJetCore.DataCollection: start cp Traceback (most recent call last): File "/afs/cern.ch/user/e/esherida/DeepJetCore/bin/convertFromSource.py", line 130, in checkfiles=dofilecheck File "/afs/cern.ch/user/e/esherida/DeepJetCore/DataCollection.py", line 555, in convertListOfRootFiles dir_check= not self.batch_mode File "/afs/cern.ch/user/e/esherida/DeepJetCore/DataCollection.py", line 373, in createDataFromRoot self.__writeData_async_andCollect(0, outputDir) File "/afs/cern.ch/user/e/esherida/DeepJetCore/DataCollection.py", line 528, in __writeData_async_andCollect __collectWriteInfo(r[1][0],r[1][1],r[1][2],outputDir) File "/afs/cern.ch/user/e/esherida/DeepJetCore/DataCollection.py", line 464, in __collectWriteInfo raise Exception("write not successful, stopping") Exception: write not successful, stopping cp: cannot create regular file '/dev/shm/9195/11915_tmp_ntuple_merged_1.root': No such file or directory Process Process-2: Traceback (most recent call last): File "/usr/lib/python3.6/multiprocessing/process.py", line 258, in _bootstrap self.run() File "/usr/lib/python3.6/multiprocessing/process.py", line 93, in run self._target(*self._args, **self._kwargs) File "/afs/cern.ch/user/e/esherida/DeepJetCore/DataCollection.py", line 435, in writeData_async raise Exception("copy to ramdisk not successful for "+sample) Exception: copy to ramdisk not successful for /eos/cms/store/group/phys_btag/PHM_tagger/test/Data_Zprime_bb_merged/ntuple_merged_1.root Singularity>